PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA09g12540
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family TCP
Protein Properties Length: 375aa    MW: 40566.5 Da    PI: 8.0023
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA09g12540genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP109.45.4e-34301703123
         TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.......................ssssaseceaess 78 
                 g+kdrhsk++T++g+RdRRvRl a++a++f+d+qd+LG+d++sk+++WL+++ak++i+el+++                       +      c  e+ 
  CA09g12540  30 GRKDRHSKVCTAKGPRDRRVRLAAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKASIDELAELppwkptigpttnntldqekdlgiQ------C--EEA 120
                 89*************************************************************998887776555543332222220......2..222 PP

         TCP  79 sssasnsssg......................kaaksaakskksqksaasalnlakesrakararar 123
                          +                      +        ++s+++  +++n a +s ++a+a a 
  CA09g12540 121 ---------QfvgdnnddnvvgpsskramimlR--------NESDTRVLHQNNSASSSGENANASAS 170
                 .........122222222355553322333331........22222222222222233333333322 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036345.2E-2830169IPR005333Transcription factor, TCP
PROSITE profilePS5136932.8553189IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MGTSSRFGSR NSGGGEIVEV QGGHIIRSIG RKDRHSKVCT AKGPRDRRVR LAAHTAIQFY  60
DVQDRLGYDR PSKAVDWLIK KAKASIDELA ELPPWKPTIG PTTNNTLDQE KDLGIQCEEA  120
QFVGDNNDDN VVGPSSKRAM IMLRNESDTR VLHQNNSASS SGENANASAS ASANASFLLP  180
SLDSDAISDT IKSFFPMGGG STDGNSSAMQ FQTFQEHNLL SRTSSQSQEL KLSLQSFQDP  240
ILLDFQNLQS QHHNRHTEQA QTQFQASNFF TGSTPLIGFG ASGWPEHQHL PVELGRMQRL  300
AAARAGGNNS TGIALGGGAV TGAGGYLFNS PXXXXXXLTH HLPRHCYSSC SAKISFCFRG  360
DPFSPVTHLR FVHG*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754515e-33HG975451.1 Solanum pennellii chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016541752.10.0PREDICTED: transcription factor TCP4-like
TrEMBLM1B8S21e-133M1B8S2_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000397861e-132(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32072349
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53230.12e-49TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3